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https://github.com/BioArchLinux/Packages.git
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55 lines
1.1 KiB
Bash
55 lines
1.1 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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_pkgname=cytoviewer
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_pkgver=1.0.1
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="An interactive multi-channel image viewer for R"
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arch=(any)
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url="https://bioconductor.org/packages/${_pkgname}"
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license=(GPL3)
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depends=(
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r-archive
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r-colourpicker
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r-cytomapper
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r-ebimage
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r-rcolorbrewer
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r-s4vectors
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r-shiny
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r-shinycssloaders
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r-shinydashboard
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r-singlecellexperiment
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r-summarizedexperiment
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r-svglite
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r-svgpanzoom
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r-viridis
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)
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checkdepends=(
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r-testthat
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)
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optdepends=(
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r-biocstyle
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r-knitr
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r-markdown
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r-rmarkdown
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('b8b7be3fc0bb988e39029fe1848b4a7a')
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sha256sums=('d47d69ea1417a862420357514d8f607dcc9ab023ab88475a1369c7fec0e56fb2')
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build() {
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mkdir -p build
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R CMD INSTALL "$_pkgname" -l build
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}
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check() {
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cd "$_pkgname/tests"
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R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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