BioArchLinux/Packages
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Aim to be the bioinformatics repository with more and newer packages
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Pekka Ristola 560945eb74
r-ps: fix build error 
```
    Traceback (most recent call last):
      File "/usr/lib/python3.11/site-packages/lilac2/worker.py", line 216, in main
        with load_lilac(Path('.')) as mod:
      File "/usr/lib/python3.11/contextlib.py", line 137, in __enter__
        return next(self.gen)
               ^^^^^^^^^^^^^^
      File "/usr/lib/python3.11/site-packages/lilac2/lilacpy.py", line 46, in load_lilac
        spec.loader.exec_module(mod)
      File "<frozen importlib._bootstrap_external>", line 940, in exec_module
      File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
      File "/usr/share/lilac/Packages/BioArchLinux/r-ps/lilac.py", line 7, in <module>
        from lilac_r_utils import r_pre_build
      File "/usr/share/lilac/Packages/lilac-extensions/lilac_r_utils.py", line 2, in <module>
        from lilaclib import _G, edit_file, run_protected
    ImportError: cannot import name '_G' from 'lilaclib' (/usr/lib/python3.11/site-packages/lilaclib.py)
```
2023-06-01 06:22:36 +03:00
.github add doi to request 2022-07-23 15:38:15 +01:00
BioArchLinux r-ps: fix build error 2023-06-01 06:22:36 +03:00
fail wf-roundedcorner: tmp rm 2023-04-30 14:07:44 +08:00
lilac-extensions r-ps: fix build error 2023-06-01 06:22:36 +03:00
logo change spelling mistake 2022-04-16 19:40:52 +01:00
prepare artemis: build from source as pre-build not work 2023-05-14 20:11:25 +08:00
BioArchLinux.bibtex add bibtex 2022-07-21 20:16:55 +01:00
CITATION.cff citation: change back to make bibtex normal 2022-11-08 16:58:07 +08:00
CODE_OF_CONDUCT.md Create CODE_OF_CONDUCT.md 2021-08-23 17:14:10 +08:00
LICENSE Create LICENSE 2021-11-28 22:39:38 +00:00
README.md add: junest 2023-05-09 00:32:05 +08:00

README.md

BioArchLinux

BioArchLinux

Wiki Matrix Mirror Repo Status

Special sponsor

Usage

ArchLinux and ArchLinux based distributions

Add the following content to the /etc/pacman.conf

[bioarchlinux]
Server = https://repo.bioarchlinux.org/$arch

You can replace the https://repo.bioarchlinux.org/$arch with any mirror in mirrorlist

install GPG keyring to use bioarchlinux

# pacman-key --recv-keys B1F96021DB62254D
# pacman-key --finger B1F96021DB62254D
# pacman-key --lsign-key B1F96021DB62254D

update the database

# pacman -Syy

install any package

# pacman -S foo

Windows

You can use WSL to use our repo, see here

Docker

You can use docker to use our repo, see here

ISO

You can use ISO image via virtual machine software to use our repo, see here

non-root Linux users

You can use junest BioArchLinux image to use our repo, see here

Citation

Zhang G. Hu Y. Drobot V. Staal J. Yi Y. Elliot MG. 2022. BioArchLinux: bioinformatics community with Arch Linux. F1000Research 11: 809. https://doi.org/10.7490/f1000research.1119039.1

Get Bibtex Here