mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
60 lines
1.2 KiB
Bash
60 lines
1.2 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
|
|
|
|
_pkgname=GenomicPlot
|
|
_pkgver=1.0.1
|
|
pkgname=r-${_pkgname,,}
|
|
pkgver=${_pkgver//-/.}
|
|
pkgrel=1
|
|
pkgdesc="Plot profiles of next generation sequencing data in genomic features"
|
|
arch=(any)
|
|
url="https://bioconductor.org/packages/$_pkgname"
|
|
license=('GPL-2.0-only')
|
|
depends=(
|
|
r-biocgenerics
|
|
r-circlize
|
|
r-complexheatmap
|
|
r-cowplot
|
|
r-dplyr
|
|
r-edger
|
|
r-genomation
|
|
r-genomeinfodb
|
|
r-genomicalignments
|
|
r-genomicfeatures
|
|
r-genomicranges
|
|
r-ggplot2
|
|
r-ggplotify
|
|
r-ggpubr
|
|
r-ggsci
|
|
r-ggsignif
|
|
r-iranges
|
|
r-plyranges
|
|
r-rcas
|
|
r-rsamtools
|
|
r-rtracklayer
|
|
r-scales
|
|
r-tidyr
|
|
r-venndiagram
|
|
r-viridis
|
|
)
|
|
optdepends=(
|
|
r-annotationdbi
|
|
r-biobase
|
|
r-biocstyle
|
|
r-knitr
|
|
r-r.utils
|
|
r-rmarkdown
|
|
r-testthat
|
|
)
|
|
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
|
md5sums=('bcc9e662f63c7b11abdeeb1c42397fca')
|
|
b2sums=('a33075353f3ff8c7f8eae3c8239365cbdc69399079a31324924844e1c8a2d229bf9abc9c2664d1b44b58f90b544032a130b92f3592d93c270fcfc0e29b6a061f')
|
|
|
|
build() {
|
|
mkdir build
|
|
R CMD INSTALL -l build "$_pkgname"
|
|
}
|
|
|
|
package() {
|
|
install -d "$pkgdir/usr/lib/R/library"
|
|
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
|
}
|