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50 lines
1.1 KiB
Bash
50 lines
1.1 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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_pkgname=vsclust
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_pkgver=1.4.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="Feature-based variance-sensitive quantitative clustering"
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arch=(x86_64)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-2.0-only')
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depends=(
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r-limma
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r-matrixstats
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r-multiassayexperiment
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r-qvalue
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r-shiny
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)
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makedepends=(
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r-rcpp
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)
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checkdepends=(
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r-testthat
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)
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optdepends=(
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r-biocstyle
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r-clusterprofiler
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r-knitr
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r-rmarkdown
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r-testthat
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r-yaml
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('0c492a6d65d0b230211a0f95706b51a4')
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b2sums=('5f8f8849b5eb42cca0c73767cf8eae95f22473855054021ab78ecfdf2dc1725de17f06a477b742fccb40b72ab4f5af5a7f8ad083cdb28e4abee95da6b0bd737c')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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check() {
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cd "$_pkgname/tests"
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R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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