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49 lines
1.2 KiB
Bash
49 lines
1.2 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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_pkgname=crisprBase
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_pkgver=1.6.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="Base functions and classes for CRISPR gRNA design"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('MIT')
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depends=(
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r-biocgenerics
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r-biostrings
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r-genomicranges
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r-iranges
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r-s4vectors
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r-stringr
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)
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checkdepends=(
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r-testthat
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)
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optdepends=(
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r-biocstyle
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r-knitr
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r-rmarkdown
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('20cc1254ee7d33a966bb795f09f8be44')
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b2sums=('61d2bd26b66656e1f035c94d1b8399126f7e1a99e00b469d9156a90270a5e085aab3e21f13ddbc98a074358dc1112db78ab43fdf2bc13e56e7f423b1ff8fae0f')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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check() {
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cd "$_pkgname/tests"
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R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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install -d "$pkgdir/usr/share/licenses/$pkgname"
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ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
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}
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