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67 lines
1.4 KiB
Bash
67 lines
1.4 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=DEGreport
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_pkgver=1.38.5
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="Report of DEG analysis"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('MIT')
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depends=(
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r-biobase
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r-biocgenerics
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r-broom
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r-circlize
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r-complexheatmap
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r-consensusclusterplus
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r-cowplot
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r-dendextend
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r-deseq2
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r-dplyr
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r-edger
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r-ggdendro
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r-ggplot2
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r-ggrepel
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r-knitr
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r-logging
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r-magrittr
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r-psych
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r-rcolorbrewer
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r-reshape
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r-rlang
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r-s4vectors
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r-scales
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r-stringi
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r-stringr
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r-summarizedexperiment
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r-tibble
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r-tidyr
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)
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optdepends=(
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r-annotationdbi
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r-biocstyle
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r-limma
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r-pheatmap
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r-rmarkdown
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r-statmod
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('c244b736c180d78d142dd00938f7d40f')
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b2sums=('8d4599d52db4b20b152b89f44869d5786c2904ddd6ab92715ec83988db20f7acf3f9cd20b2b3ffff9d9f816c03f208e0e285e5d165d28f6d94032c2eb29d93ce')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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install -d "$pkgdir/usr/share/licenses/$pkgname"
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ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
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}
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