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46 lines
1.1 KiB
Bash
46 lines
1.1 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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_pkgname=ZygosityPredictor
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_pkgver=1.6.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="Package for prediction of zygosity for variants/genes in NGS data"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-2.0-only')
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depends=(
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r-delayedarray
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r-dplyr
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r-genomicalignments
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r-genomicranges
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r-igraph
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r-iranges
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r-knitr
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r-magrittr
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r-purrr
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r-readr
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r-rlang
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r-rsamtools
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r-stringr
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r-tibble
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r-variantannotation
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)
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optdepends=(
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r-biocstyle
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r-rmarkdown
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('ea68947d05bf3b8ba399155f1fbf4c08')
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b2sums=('df777214ec6cb6ed8fcf08463cd84b97cd8c761976ff92240cb1066b1e32289b5592030014bd9a3817cdb20dd0bda33e43957e0bf3689ad028bb953025bada95')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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