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31 lines
1.4 KiB
Bash
31 lines
1.4 KiB
Bash
#Maintainer Matthijs Tadema <M dot J dot Tadema at pm dot me>
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#Previous Maintainer Jens Staal <staal1978@gmail.com>
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pkgname=ugene
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pkgver=40.1
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pkgrel=1
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pkgdesc="A free cross-platform genome analysis suite (binary release)"
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arch=('x86_64')
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url="http://ugene.net"
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license=('GPL')
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depends=('libxtst' 'glu' 'qt5-webkit' 'qt5-websockets' 'qt5-svg' 'qt5-script' 'desktop-file-utils')
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optdepends=('cufflinks' 'bowtie' 'clustalw' 'phyml' 'blast+' 'clustal-omega' 'vcftools' 'mrbayes' 'bwa' 'bedtools'
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'tcoffee' 'hmmer' 'snpeff' 'samtools' 'mafft' 'trimmomatic' 'stringtie' 'kraken' 'diamond-aligner'
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'python2-cutadapt' 'python' 'java-runtime' 'bowtie2' 'tophat' 'fastqc')
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provides=('ugene')
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conflicts=('ugene-git')
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source=("https://github.com/ugeneunipro/ugene/releases/download/${pkgver}/ugene-${pkgver}-linux-x86-64.tar.gz" "ugene.desktop" "ugene.svg")
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sha256sums=('e43afa4be6ba452d4f7a29b35fad8da7da46d7dc60b192c959e9849fa25b505d'
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'58aeee982faa07913c016323cdded0a4022695c4e313954fdc09c36742013896'
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'5a159437635965cae796c968c7297fd098e7f86dcecbe6a97e62950e782641fc')
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package() {
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mkdir -p "${pkgdir}/usr/"{bin,share/{applications,icons,ugene}}
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install -D -m 755 ugene.svg "${pkgdir}/usr/share/icons/ugene.svg"
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cd "$srcdir/ugene-$pkgver"
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chmod +x *
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mv * $pkgdir/usr/share/ugene
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ln -s /usr/share/ugene/ugene "$pkgdir"/usr/bin/ugene
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install -D -m 755 ${srcdir}/*.desktop "${pkgdir}/usr/share/applications"
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}
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