mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
54 lines
1.1 KiB
Bash
54 lines
1.1 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
|
|
|
_pkgname=TimiRGeN
|
|
_pkgver=1.4.0
|
|
pkgname=r-${_pkgname,,}
|
|
pkgver=1.4.0
|
|
pkgrel=1
|
|
pkgdesc='Time sensitive microRNA-mRNA integration, analysis and network generation tool'
|
|
arch=('any')
|
|
url="https://bioconductor.org/packages/${_pkgname}"
|
|
license=('GPL')
|
|
depends=(
|
|
r
|
|
r-biomart
|
|
r-clusterprofiler
|
|
r-dplyr
|
|
r-freqprof
|
|
r-ggdendro
|
|
r-gghighlight
|
|
r-ggplot2
|
|
r-gplots
|
|
r-gtools
|
|
r-igraph
|
|
r-mfuzz
|
|
r-multiassayexperiment
|
|
r-rcy3
|
|
r-readxl
|
|
r-reshape2
|
|
r-rwikipathways
|
|
r-scales
|
|
r-stringr
|
|
r-tidyr
|
|
)
|
|
optdepends=(
|
|
r-biocmanager
|
|
r-kableextra
|
|
r-knitr
|
|
r-org.hs.eg.db
|
|
r-org.mm.eg.db
|
|
r-rmarkdown
|
|
r-testthat
|
|
)
|
|
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
|
sha256sums=('208a13394d80603fa0cc67aa7a1967fc7481fe01b06f71096d3954fb88e0fbd2')
|
|
|
|
build() {
|
|
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
|
}
|
|
|
|
package() {
|
|
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
|
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
|
}
|
|
# vim:set ts=2 sw=2 et:
|