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52 lines
1.1 KiB
Bash
52 lines
1.1 KiB
Bash
# system requirements: GNU make
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=maftools
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_pkgver=2.12.0
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pkgname=r-${_pkgname,,}
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pkgver=2.12.0
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pkgrel=1
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pkgdesc='Summarize, Analyze and Visualize MAF Files'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('MIT')
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depends=(
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r
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r-data.table
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r-rcolorbrewer
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r-rhtslib
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r-zlibbioc
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make
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r-dnacopy
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)
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optdepends=(
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r-berryfunctions
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r-biostrings
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r-bsgenome
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r-bsgenome.hsapiens.ucsc.hg19
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r-curl
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r-genomicranges
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r-iranges
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r-knitr
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r-mclust
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r-multiassayexperiment
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r-nmf
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r-pheatmap
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r-r.utils
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r-raggedexperiment
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r-rmarkdown
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r-s4vectors
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('66ceeb909cc6bd3a952f305273f95a6ee836c5033252c58925463bb24b8a0ebf')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
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}
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# vim:set ts=2 sw=2 et:
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