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25 lines
778 B
Bash
25 lines
778 B
Bash
# Maintainer: Guoyi Zhang <guoyi zhang at malacology dot net>
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# Contributor: Grey Christoforo <first name at last name dot net>
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pkgname=picard-tools
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_pkgname=picard
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pkgver=3.1.0
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pkgrel=1
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pkgdesc='set of tools for working with next generation sequencing data in the BAM format'
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arch=(any)
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url="https://github.com/broadinstitute/picard"
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license=(MIT)
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depends=('java-runtime=17')
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makedepends=('ant' 'git' 'java-environment=17')
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source=("git+${url}.git#tag=${pkgver}")
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sha256sums=('SKIP')
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build(){
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cd $_pkgname
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./gradlew shadowJar
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}
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package() {
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echo "java -jar /usr/share/$pkgname/picard.jar" >> $pkgname
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chmod +x $pkgname
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install -Dm 755 $pkgname $pkgdir/usr/bin/$pkgname
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install -Dm 755 $srcdir/$_pkgname/build/libs/picard.jar $pkgdir/usr/share/$pkgname/picard.jar
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}
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