mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
62 lines
1.3 KiB
Bash
62 lines
1.3 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
|
|
|
_pkgname=clustifyr
|
|
_pkgver=1.18.0
|
|
pkgname=r-${_pkgname,,}
|
|
pkgver=${_pkgver//-/.}
|
|
pkgrel=1
|
|
pkgdesc="Classifier for Single-cell RNA-seq Using Cell Clusters"
|
|
arch=(any)
|
|
url="https://bioconductor.org/packages/$_pkgname"
|
|
license=('MIT')
|
|
depends=(
|
|
r-cowplot
|
|
r-dplyr
|
|
r-entropy
|
|
r-fgsea
|
|
r-ggplot2
|
|
r-httr
|
|
r-matrixstats
|
|
r-proxy
|
|
r-rlang
|
|
r-s4vectors
|
|
r-scales
|
|
r-seuratobject
|
|
r-singlecellexperiment
|
|
r-stringr
|
|
r-summarizedexperiment
|
|
r-tibble
|
|
r-tidyr
|
|
)
|
|
optdepends=(
|
|
r-biocmanager
|
|
r-biocstyle
|
|
r-complexheatmap
|
|
r-covr
|
|
r-data.table
|
|
r-ggrepel
|
|
r-gprofiler2
|
|
r-knitr
|
|
r-purrr
|
|
r-r.utils
|
|
r-remotes
|
|
r-rmarkdown
|
|
r-shiny
|
|
r-testthat
|
|
)
|
|
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
|
md5sums=('d77ecc21f83dc756601f836e80765342')
|
|
b2sums=('ba47c45ac9095d4b2c7080dd1e0cd6024c2aa8db4895cd04deeef080e5a4f16538d690843d658b55be5ba1d1e9ad607b784cf3d2b1760ecf8e57699ea79c973d')
|
|
|
|
build() {
|
|
mkdir build
|
|
R CMD INSTALL -l build "$_pkgname"
|
|
}
|
|
|
|
package() {
|
|
install -d "$pkgdir/usr/lib/R/library"
|
|
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
|
|
|
install -d "$pkgdir/usr/share/licenses/$pkgname"
|
|
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
|
|
}
|