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46 lines
1.1 KiB
Bash
46 lines
1.1 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=compartmap
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_pkgver=1.20.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="Higher-order chromatin domain inference in single cells from scRNA-seq and scATAC-seq"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-3.0-only')
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depends=(
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r-biocsingular
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r-delayedarray
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r-delayedmatrixstats
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r-genomicranges
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r-ggplot2
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r-hdf5array
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r-raggedexperiment
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r-reshape2
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r-rmtstat
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r-rtracklayer
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r-scales
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r-summarizedexperiment
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)
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optdepends=(
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r-covr
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r-knitr
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r-markdown
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r-rcpp
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r-rmarkdown
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('7bb714178ae20c636a9e5b1cd3fde06c')
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b2sums=('6a1553f1e930caf277fb36dc5b1d16d00d68de27b850f2ed811ba6781527cc507c4c6c16532ea54626afbca55c51be3d72209c3a7d2446d007c74bef965ffe7d')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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