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44 lines
892 B
Bash
44 lines
892 B
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=MethCP
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_pkgver=1.13.0
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pkgname=r-${_pkgname,,}
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pkgver=1.13.0
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pkgrel=1
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pkgdesc='Differential methylation anlsysis for bisulfite sequencing data'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('Artistic2.0')
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depends=(
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r
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r-biocparallel
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r-bsseq
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r-dnacopy
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r-dss
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r-genomeinfodb
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r-genomicranges
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r-iranges
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r-methylkit
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r-s4vectors
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)
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optdepends=(
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r-knitr
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r-rmarkdown
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r-testthat
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)
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makedepends=(
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git
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)
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source=("git+https://git.bioconductor.org/packages/${_pkgname}")
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sha256sums=('SKIP')
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build() {
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tar -zcvf ${_pkgname}_${_pkgver}.tar.gz ${_pkgname}
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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