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58 lines
1.2 KiB
Bash
58 lines
1.2 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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_pkgname=APL
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_pkgver=1.6.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=2
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pkgdesc="Association Plots"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-3.0-or-later')
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depends=(
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r-ggplot2
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r-ggrepel
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r-magrittr
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r-org.hs.eg.db
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r-org.mm.eg.db
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r-plotly
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r-reticulate
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r-rlang
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r-seurat
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r-singlecellexperiment
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r-summarizedexperiment
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r-topgo
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r-viridislite
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)
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checkdepends=(
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python-pytorch
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r-testthat
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)
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optdepends=(
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"python-pytorch: faster singular value decomposition"
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r-biocstyle
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r-knitr
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r-rmarkdown
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r-scater
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r-scran
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r-scrnaseq
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('725b38bc042e6b6fd349aac0ff3d471c')
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b2sums=('2d0235a4f1f8eb8d89adc4a8af966fb2296ecf4886e98ecda51ec360db76d43dba27a60cfbdcfff2799f649923154a632a658a2e8b12afc6cff2372c49577095')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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check() {
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cd "$_pkgname/tests"
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R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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