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64 lines
1.3 KiB
Bash
64 lines
1.3 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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_pkgname=xcore
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_pkgver=1.10.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="xcore expression regulators inference"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-2.0-only')
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depends=(
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r-delayedarray
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r-edger
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r-foreach
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r-genomicranges
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r-glmnet
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r-iranges
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r-iterators
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r-magrittr
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r-multiassayexperiment
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r-s4vectors
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)
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checkdepends=(
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r-ridge
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r-testthat
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)
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optdepends=(
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r-annotationhub
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r-biocgenerics
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r-biocparallel
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r-biocstyle
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r-data.table
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r-devtools
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r-doparallel
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r-experimenthub
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r-knitr
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r-pheatmap
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r-proxy
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r-ridge
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r-rmarkdown
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r-rtracklayer
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r-testthat
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r-usethis
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r-xcoredata
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('1f25b26360120ca184ece31f704c8daa')
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b2sums=('ed092a287cad773a43cb6c068933b9f01c929bda0dccba9e99778e91dcfa6e694416488e246737b4b0ddd0e8cf53222fd2c77798cd6d056fcb6d8707e8ed96a4')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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check() {
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cd "$_pkgname/tests"
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R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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