mirror of
https://github.com/BioArchLinux/Packages.git
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66 lines
1.3 KiB
Bash
66 lines
1.3 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=bambu
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_pkgver=3.8.0
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pkgname=r-${_pkgname,,}
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pkgver=3.8.0
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pkgrel=1
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pkgdesc='Reference-guided isoform reconstruction and quantification for long read RNA-Seq data'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-biocgenerics
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r-biocparallel
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r-data.table
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r-dplyr
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r-genomeinfodb
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r-genomicalignments
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r-genomicfeatures
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r-genomicranges
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r-iranges
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r-rcpp
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r-rcpparmadillo
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r-rsamtools
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r-s4vectors
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r-summarizedexperiment
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r-tidyr
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r-xgboost
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r-bsgenome
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)
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optdepends=(
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r-annotationdbi
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r-apeglm
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r-biocfilecache
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r-biostrings
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r-bsgenome.hsapiens.ncbi.grch38
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r-circlize
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r-complexheatmap
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r-deseq2
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r-dexseq
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r-experimenthub
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r-ggbio
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r-ggplot2
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r-gridextra
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r-knitr
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r-nanoporernaseq
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r-parallel
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r-purrr
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r-rmarkdown
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r-testthat
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r-txdb.hsapiens.ucsc.hg38.knowngene
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r-utils
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('3278adc8bfe36e5fccf802bae2a2d678c023e01c49fe0d969f4e34cef4c601ca')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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