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51 lines
1.1 KiB
Bash
51 lines
1.1 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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_pkgname=alabaster.matrix
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_pkgver=1.0.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=3
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pkgdesc="Load and Save Artifacts from File"
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arch=(any)
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url="https://bioconductor.org/packages/${_pkgname}"
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license=(MIT)
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depends=(
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r-alabaster.base
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r-biocgenerics
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r-delayedarray
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r-hdf5array
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r-rhdf5
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r-s4vectors
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r-sparsearray
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)
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checkdepends=(
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r-chihaya
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r-testthat
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)
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optdepends=(
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r-biocstyle
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r-chihaya
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r-knitr
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('4b93a993b0f4a9b3333da48a8f49ad36')
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sha256sums=('637424bdb91f4f286cc1ed64405c5ef43c8ae96f849b038477536054344e1550')
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build() {
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mkdir -p build
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R CMD INSTALL "$_pkgname" -l build
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}
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check() {
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cd "$_pkgname/tests"
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R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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install -d "$pkgdir/usr/share/licenses/$pkgname"
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ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
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}
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