mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
44 lines
1 KiB
Bash
44 lines
1 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
|
|
|
_pkgname=SeqSQC
|
|
_pkgver=1.28.0
|
|
pkgname=r-${_pkgname,,}
|
|
pkgver=${_pkgver//-/.}
|
|
pkgrel=1
|
|
pkgdesc="A bioconductor package for sample quality check with next generation sequencing data"
|
|
arch=(any)
|
|
url="https://bioconductor.org/packages/$_pkgname"
|
|
license=('GPL-3.0-only')
|
|
depends=(
|
|
r-e1071
|
|
r-experimenthub
|
|
r-gdsfmt
|
|
r-genomicranges
|
|
r-ggally
|
|
r-ggplot2
|
|
r-iranges
|
|
r-plotly
|
|
r-rcolorbrewer
|
|
r-reshape2
|
|
r-rmarkdown
|
|
r-s4vectors
|
|
r-snprelate
|
|
)
|
|
optdepends=(
|
|
r-biocstyle
|
|
r-knitr
|
|
r-testthat
|
|
)
|
|
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
|
md5sums=('d3038a849a70cc2625cf2931230e0a2a')
|
|
b2sums=('93f7fa78d4f0a4a023fdda2642a62c180826af4a8a4017dfcb3cf98cd50cf951f3ad75412b58cccf8d1b6d2df092ddd40eaabe8f0336c3517b135e108d84b69e')
|
|
|
|
build() {
|
|
mkdir build
|
|
R CMD INSTALL -l build "$_pkgname"
|
|
}
|
|
|
|
package() {
|
|
install -d "$pkgdir/usr/lib/R/library"
|
|
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
|
}
|