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32 lines
808 B
Bash
32 lines
808 B
Bash
#Maintainer: Guoyi Zhang <guoyizhang@malacology.net>
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pkgname=stacks
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pkgver=2.68
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pkgrel=2
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pkgdesc="building loci from short-read sequences https://dx.doi.org/10.1111/mec.15253"
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arch=('x86_64')
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url="https://catchenlab.life.illinois.edu/stacks/"
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depends=('gcc-libs' 'r' 'perl' 'python')
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makedepends=('make' 'gcc' 'openmpi')
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optdepends=('openmpi: for parallel')
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license=('GPL-3.0-or-later')
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source=("https://catchenlab.life.illinois.edu/stacks/source/stacks-${pkgver}.tar.gz")
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md5sums=('8b7d8437d45b9d78c4e95a50c8e55c67')
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build() {
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cd "${pkgname}-${pkgver}"
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./configure --prefix="${pkgdir}/usr"
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make all
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}
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package() {
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cd "${pkgname}-${pkgver}"
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make install
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for pl_bin in ref_map.pl denovo_map.pl
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do
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sed -i "s@/build/stacks/pkg/stacks/usr/bin/@/usr/bin/@" $pkgdir/usr/bin/$pl_bin
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done
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}
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