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34 lines
884 B
Bash
34 lines
884 B
Bash
# maintainer: Guoyi
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pkgname=freebayes
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pkgver=1.3.6
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pkgrel=1
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pkgdesc="About Bayesian haplotype-based genetic polymorphism discovery and genotyping"
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arch=('x86_64')
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url="https://github.com/freebayes/freebayes"
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license=('MIT')
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depends=('tabixpp' 'vcflib' 'vcftools' 'samtools' 'parallel' 'bc')
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makedepends=('ninja' 'meson' 'git' 'cmake' 'make')
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optdepends=()
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source=(git+https://github.com/freebayes/freebayes.git#tag=v${pkgver})
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noextract=()
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sha256sums=('SKIP')
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prepare() {
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cd "$pkgname"
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git submodule update --init --recursive
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# find vcflib
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sed -i "s|dependency('libvcflib'|cc.find_library('libvcflib'" CMakeLists.txt
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}
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build() {
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cd "$pkgname"
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test -d build || mkdir build
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meson --prefix=/usr --buildtype=release build -Dprefer_system_deps=true
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cd build
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ninja -v
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}
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package() {
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cd "$pkgname-$pkgver"
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install -Dm 755 build/freebayes $pkgdir/usr/bin/freebayes
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}
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