mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
15 lines
425 B
Bash
15 lines
425 B
Bash
#!/bin/sh
|
|
|
|
if [ -n "$FASTQC_JAVA" ]; then
|
|
javaenv="$FASTQC_JAVA"
|
|
else
|
|
default_java="$(archlinux-java get)"
|
|
if [ "$(echo "$default_java" | cut -d - -f 2)" -ge 11 ]; then
|
|
javaenv="$default_java"
|
|
else
|
|
# use latest available java
|
|
javaenv="$(archlinux-java status | tail -n +2 | cut -d ' ' -f 3 | sort -nk 2 -t - | tail -n 1)"
|
|
fi
|
|
fi
|
|
|
|
PATH="/usr/lib/jvm/$javaenv/bin:$PATH" exec /usr/share/fastqc/fastqc "$@"
|