mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
64 lines
1.3 KiB
Bash
64 lines
1.3 KiB
Bash
# system requirements: JAGS 4.x.y
|
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
|
|
|
_pkgname=infercnv
|
|
_pkgver=1.18.1
|
|
pkgname=r-${_pkgname,,}
|
|
pkgver=1.18.1
|
|
pkgrel=1
|
|
pkgdesc='Infer Copy Number Variation from Single-Cell RNA-Seq Data'
|
|
arch=('any')
|
|
url="https://bioconductor.org/packages/${_pkgname}"
|
|
license=('BSD')
|
|
depends=(
|
|
r
|
|
r-ape
|
|
r-argparse
|
|
r-biocgenerics
|
|
r-catools
|
|
r-coda
|
|
r-coin
|
|
r-digest
|
|
r-doparallel
|
|
r-dplyr
|
|
r-edger
|
|
r-fastcluster
|
|
r-fitdistrplus
|
|
r-foreach
|
|
r-futile.logger
|
|
r-future
|
|
r-ggplot2
|
|
r-gplots
|
|
r-gridextra
|
|
r-hiddenmarkov
|
|
r-igraph
|
|
r-paralleldist
|
|
r-phyclust
|
|
r-rann
|
|
r-rcolorbrewer
|
|
r-reshape2
|
|
r-rjags
|
|
r-seurat
|
|
r-singlecellexperiment
|
|
r-summarizedexperiment
|
|
r-tidyr
|
|
)
|
|
optdepends=(
|
|
r-biocstyle
|
|
r-knitr
|
|
r-rmarkdown
|
|
r-testthat
|
|
)
|
|
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
|
sha256sums=('eadc079ffc2681efddfb760b52adee870914f168251c94c8be2159a1e1b031b5')
|
|
|
|
build() {
|
|
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
|
}
|
|
|
|
package() {
|
|
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
|
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
|
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
|
|
}
|
|
# vim:set ts=2 sw=2 et:
|