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54 lines
1.2 KiB
Bash
54 lines
1.2 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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_pkgname=STdeconvolve
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_pkgver=1.8.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="Reference-free Cell-Type Deconvolution of Multi-Cellular Spatially Resolved Transcriptomics Data"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-3.0-only')
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depends=(
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r-biocparallel
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r-clue
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r-ggplot2
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r-liger
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r-reshape2
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r-scatterpie
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r-slam
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r-topicmodels
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r-viridis
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)
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checkdepends=(
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r-testthat
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)
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optdepends=(
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r-biocstyle
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r-dplyr
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r-gplots
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r-gridextra
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r-hash
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r-knitr
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r-rcmdcheck
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r-rmarkdown
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('e2fdd06f6b49bb938994b6b2711d46ed')
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b2sums=('ae1cec96f32f031fbb7cfe645602152555d1b3f795519c188c9478292ace916b00e9b2036ca169077e29dbe269bd57c9b7fd662bd1bce83d314ed73e7ef3be0a')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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check() {
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cd "$_pkgname/tests"
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R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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