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44 lines
1 KiB
Bash
44 lines
1 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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_pkgname=cfdnakit
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_pkgver=1.4.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="Fragmen-length analysis package from high-throughput sequencing of cell-free DNA (cfDNA)"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-3.0-only')
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depends=(
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r-biobase
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r-dplyr
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r-genomeinfodb
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r-genomicranges
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r-ggplot2
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r-iranges
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r-magrittr
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r-pscbs
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r-qdnaseq
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r-rlang
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r-rsamtools
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r-s4vectors
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)
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optdepends=(
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r-biocstyle
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r-knitr
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r-rmarkdown
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r-roxygen2
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('5c2b321346a514f4aa3043afc450fd63')
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b2sums=('396553337a234d5ce04765e3632f7d9b81723bf3543ba80fc81111c527574ed343eca233be6dfbfe9ec8588acd30a705fedec47304f5a1fccf8fc1bfc69ec4ec')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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