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58 lines
1.3 KiB
Bash
58 lines
1.3 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=EpiTxDb
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_pkgver=1.18.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="Storing and accessing epitranscriptomic information using the AnnotationDbi interface"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('Artistic-2.0')
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depends=(
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r-annotationdbi
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r-biocfilecache
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r-biocgenerics
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r-biostrings
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r-curl
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r-dbi
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r-genomeinfodb
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r-genomicfeatures
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r-genomicranges
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r-httr
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r-iranges
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r-modstrings
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r-rex
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r-rsqlite
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r-s4vectors
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r-trnadbimport
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r-txdbmaker
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r-xml2
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)
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optdepends=(
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r-annotationhub
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r-biocstyle
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r-bsgenome.hsapiens.ucsc.hg38
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r-bsgenome.scerevisiae.ucsc.saccer3
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r-ensembldb
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r-epitxdb.hs.hg38
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r-ggplot2
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r-httptest
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r-knitr
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r-rmarkdown
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r-testthat
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r-txdb.hsapiens.ucsc.hg38.knowngene
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('9eaa3d39c3126909d669fd4e98b76ac7')
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b2sums=('5d3c367e70bf1c060bcd1d88788a400c970afdeb0677c49a238235567bb5b21347c5c69ca7b58ab06fdf8089968675042cf5b9a4eee2987631ea852c7e016e74')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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