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51 lines
1.2 KiB
Bash
51 lines
1.2 KiB
Bash
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
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_pkgname=ompBAM
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_pkgver=1.8.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('MIT')
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depends=(
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r-rcpp
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r-zlibbioc
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)
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checkdepends=(
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r-devtools
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r-rcppprogress
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r-testthat
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)
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optdepends=(
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r-desc
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r-devtools
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r-knitr
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r-rcppprogress
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r-rmarkdown
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r-roxygen2
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r-testthat
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r-usethis
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('867d3c1d9d846bfea4545c18509ed756')
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b2sums=('8d860185474677c4d57bba1684794b76253fac095df9fe98a9190e4c663ec4681b2d9bdfee9ab083584d527db9eb20d7ab60ce6f3408c3517733e0962867ddf0')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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check() {
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cd "$_pkgname/tests"
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R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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install -d "$pkgdir/usr/share/licenses/$pkgname"
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ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
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}
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