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36 lines
1 KiB
Bash
36 lines
1 KiB
Bash
# Maintainer: Mick Elliot <m.g.elliot@rug.nl>
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# Contributor: Mick Elliot <m.g.elliot@rug.nl>
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pkgname=lastz_backtobackgaps
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_pkgname=lastz
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pkgver=1.04.15
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pkgrel=3
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pkgdesc="Pairwise DNA sequence aligner. This version allows back to back gaps (adjacent indels) but might break backward compatibility with lastZ and BLASTZ."
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arch=('x86_64')
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url="https://lastz.github.io/lastz/"
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license=('MIT')
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depends=(glibc)
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makedepends=()
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provides=(lastz)
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source=("https://github.com/${_pkgname}/${_pkgname}/archive/refs/tags/${pkgver}.tar.gz")
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sha256sums=('46a5cfb1fd41911a36fce5d3a2721ebfec9146952943b302e78b0dfffddd77f8')
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build() {
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cd "${_pkgname}-${pkgver}"
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make -f Makefile.warnings allowBackToBackGaps=ON
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make -f Makefile.warnings lastz_32 allowBackToBackGaps=ON
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}
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check() {
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cd "${_pkgname}-${pkgver}"
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make test
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}
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package() {
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cd "${_pkgname}-${pkgver}"
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export LASTZ_INSTALL="${pkgdir}/usr/bin" && make install
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export LASTZ_INSTALL="${pkgdir}/usr/bin" && make install_32
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install -Dm644 LICENSE "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
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}
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