mirror of
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58 lines
1.3 KiB
Bash
58 lines
1.3 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=trena
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_pkgver=1.24.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc="Fit transcriptional regulatory networks using gene expression, priors, machine learning"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=('GPL-3.0-only')
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depends=(
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r-annotationdbi
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r-biomart
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r-biostrings
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r-bsgenome
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r-bsgenome.hsapiens.ucsc.hg19
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r-bsgenome.hsapiens.ucsc.hg38
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r-bsgenome.mmusculus.ucsc.mm10
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r-dbi
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r-genomicranges
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r-glmnet
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r-lassopv
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r-motifdb
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r-org.hs.eg.db
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r-randomforest
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r-rmysql
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r-rpostgresql
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r-rsqlite
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r-snplocs.hsapiens.dbsnp150.grch38
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r-wgcna
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r-xgboost
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)
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optdepends=(
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r-biocgenerics
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r-biocparallel
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r-bsgenome.athaliana.tair.tair9
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r-bsgenome.scerevisiae.ucsc.saccer3
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r-formatr
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r-knitr
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r-markdown
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r-plyr
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r-rmarkdown
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r-runit
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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md5sums=('427f71434aa331a134672ca1746a28ae')
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b2sums=('49f6d96f191c2dd8128b4ba88ae4f5db67a5ce8750d8529c8159e379d3022135f81ad437bc66121b3f6a0312bcdc32905ed630af3986ced9ca2d2ee0b276d986')
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build() {
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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