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39 lines
1 KiB
Bash
39 lines
1 KiB
Bash
# Maintainer: Bipin Kumar <kbipinkumar@pm.me>
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pkgname=qtl-seq
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_name=QTL-seq
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pkgver=2.2.9
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pkgrel=1
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pkgdesc='Pipeline for bulk segregant analysis. https://doi.org/10.7717/peerj.13170'
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arch=('x86_64')
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url="https://github.com/YuSugihara/QTL-seq"
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license=('GPL')
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depends=(
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'bwa'
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'samtools'
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'snpeff'
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'bcftools'
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'trimmomatic'
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'python-matplotlib'
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'python-numpy'
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'python-pandas'
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'python-seaborn')
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optdepends=('mutmap: identify causative mutations responsible for phenotype')
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makedepends=(
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'python-setuptools'
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'cython'
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'python-setuptools-scm'
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)
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options=(!emptydirs)
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source=($_name-$pkgver::"https://github.com/YuSugihara/QTL-seq/archive/refs/tags/v$pkgver.tar.gz")
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sha256sums=('aca1cecb48f0b9bcec4f77bb7a6ab07f7f687a924a58d7a7f81c460aa3abcd9e')
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build() {
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cd "$srcdir/$_name-$pkgver"
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python setup.py build
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}
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package() {
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cd "$srcdir/$_name-$pkgver"
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python setup.py install --root="$pkgdir/" --optimize=1 --skip-build
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}
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