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62 lines
1.4 KiB
Bash
62 lines
1.4 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=annotatr
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_pkgver=1.20.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Annotation of Genomic Regions to Genomic Annotations'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-annotationdbi
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r-annotationhub
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r-dplyr
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r-genomeinfodb
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r-genomicfeatures
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r-genomicranges
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r-ggplot2
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r-iranges
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r-readr
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r-regioner
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r-reshape2
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r-rtracklayer
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r-s4vectors
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)
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optdepends=(
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r-biocstyle
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r-devtools
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r-knitr
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r-org.dm.eg.db
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r-org.gg.eg.db
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r-org.hs.eg.db
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r-org.mm.eg.db
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r-org.rn.eg.db
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r-rmarkdown
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r-roxygen2
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r-testthat
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r-txdb.dmelanogaster.ucsc.dm3.ensgene
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r-txdb.dmelanogaster.ucsc.dm6.ensgene
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r-txdb.ggallus.ucsc.galgal5.refgene
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r-txdb.hsapiens.ucsc.hg19.knowngene
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r-txdb.hsapiens.ucsc.hg38.knowngene
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r-txdb.mmusculus.ucsc.mm10.knowngene
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r-txdb.mmusculus.ucsc.mm9.knowngene
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r-txdb.rnorvegicus.ucsc.rn4.ensgene
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r-txdb.rnorvegicus.ucsc.rn5.refgene
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r-txdb.rnorvegicus.ucsc.rn6.refgene
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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