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71 lines
1.3 KiB
Bash
71 lines
1.3 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=BiocOncoTK
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_pkgver=1.14.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Bioconductor components for general cancer genomics'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('Artistic2.0')
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depends=(
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r
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r-bigrquery
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r-car
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r-complexheatmap
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r-curatedtcgadata
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r-dbi
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r-dplyr
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r-dt
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r-genomicfeatures
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r-genomicranges
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r-ggplot2
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r-ggpubr
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r-graph
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r-httr
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r-iranges
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r-magrittr
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r-plyr
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r-rgraphviz
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r-rjson
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r-s4vectors
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r-scales
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r-shiny
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r-summarizedexperiment
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)
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optdepends=(
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r-annotationdbi
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r-biobase
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r-biocfilecache
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r-biocstyle
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r-dbplyr
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r-ensdb.hsapiens.v75
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r-fdb.infiniummethylation.hg19
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r-genomeinfodb
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r-knitr
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r-multiassayexperiment
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r-ontologyplot
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r-ontoproc
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r-org.hs.eg.db
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r-pogos
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r-reshape2
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r-restfulse
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r-rhdf5client
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r-rmarkdown
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r-testthat
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r-txdb.hsapiens.ucsc.hg18.knowngene
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r-txdb.hsapiens.ucsc.hg19.knowngene
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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