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65 lines
1.2 KiB
Bash
65 lines
1.2 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=biscuiteer
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_pkgver=1.8.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Convenience Functions for Biscuit'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-biobase
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r-biocgenerics
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r-biocparallel
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r-biscuiteerdata
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r-bsseq
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r-data.table
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r-delayedmatrixstats
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r-dmrseq
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r-genomeinfodb
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r-genomicranges
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r-gtools
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r-hdf5array
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r-homo.sapiens
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r-impute
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r-matrixstats
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r-mus.musculus
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r-qdnaseq
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r-qualv
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r-r.utils
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r-readr
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r-rsamtools
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r-rtracklayer
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r-s4vectors
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r-summarizedexperiment
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r-variantannotation
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)
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optdepends=(
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r-covr
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r-dss
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r-knitr
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r-markdown
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r-pkgdown
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r-qdnaseq.hg19
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r-qdnaseq.mm10
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r-rlang
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r-rmarkdown
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r-roxygen2
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r-scmeth
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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