mirror of
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82 lines
1.7 KiB
Bash
82 lines
1.7 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=ChIPpeakAnno
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_pkgver=3.28.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-annotationdbi
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r-biocgenerics
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r-biomart
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r-biostrings
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r-dbi
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r-dplyr
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r-ensembldb
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r-genomeinfodb
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r-genomicalignments
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r-genomicfeatures
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r-genomicranges
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r-ggplot2
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r-graph
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r-interactionset
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r-iranges
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r-keggrest
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r-matrixstats
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r-multtest
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r-rbgl
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r-regioner
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r-rsamtools
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r-rtracklayer
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r-s4vectors
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r-summarizedexperiment
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r-venndiagram
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)
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optdepends=(
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r-annotationhub
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r-biocmanager
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r-biocstyle
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r-bsgenome
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r-bsgenome.celegans.ucsc.ce10
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r-bsgenome.drerio.ucsc.danrer7
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r-bsgenome.ecoli.ncbi.20080805
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r-bsgenome.hsapiens.ucsc.hg19
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r-bsgenome.hsapiens.ucsc.hg38
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r-delayedarray
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r-ensdb.hsapiens.v75
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r-ensdb.hsapiens.v79
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r-go.db
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r-gplots
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r-idr
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r-knitr
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r-limma
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r-motifstack
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r-org.ce.eg.db
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r-org.hs.eg.db
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r-organismdbi
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r-reactome.db
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r-rmarkdown
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r-seqinr
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r-testthat
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r-trackviewer
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r-txdb.hsapiens.ucsc.hg19.knowngene
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r-txdb.hsapiens.ucsc.hg38.knowngene
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r-upsetr
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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