mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
56 lines
1 KiB
Bash
56 lines
1 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
|
|
|
_pkgname=DaMiRseq
|
|
_pkgver=2.6.0
|
|
pkgname=r-${_pkgname,,}
|
|
pkgver=${_pkgver//[:-]/.}
|
|
pkgrel=1
|
|
pkgdesc='Data Mining for RNA-seq data: normalization, feature selection and classification'
|
|
arch=('any')
|
|
url="https://bioconductor.org/packages/${_pkgname}"
|
|
license=('GPL')
|
|
depends=(
|
|
r
|
|
r-arm
|
|
r-caret
|
|
r-corrplot
|
|
r-deseq2
|
|
r-e1071
|
|
r-edaseq
|
|
r-edger
|
|
r-factominer
|
|
r-fselector
|
|
r-ggplot2
|
|
r-hmisc
|
|
r-ineq
|
|
r-kknn
|
|
r-limma
|
|
r-lubridate
|
|
r-pheatmap
|
|
r-pls
|
|
r-plsvarsel
|
|
r-plyr
|
|
r-randomforest
|
|
r-rcolorbrewer
|
|
r-reshape2
|
|
r-rsnns
|
|
r-summarizedexperiment
|
|
r-sva
|
|
)
|
|
optdepends=(
|
|
r-biocstyle
|
|
r-knitr
|
|
r-testthat
|
|
)
|
|
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
|
sha256sums=('a')
|
|
|
|
build() {
|
|
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
|
}
|
|
|
|
package() {
|
|
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
|
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
|
}
|
|
# vim:set ts=2 sw=2 et:
|