mirror of
https://github.com/BioArchLinux/Packages.git
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50 lines
1,000 B
Bash
50 lines
1,000 B
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=dearseq
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_pkgver=1.6.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Differential Expression Analysis for RNA-seq data through a robust variance component test'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-ggplot2
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r-matrixstats
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r-patchwork
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r-pbapply
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r-statmod
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r-survey
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r-viridislite
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)
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optdepends=(
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r-biobase
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r-biocmanager
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r-biocset
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r-covr
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r-deseq2
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r-edger
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r-geoquery
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r-gsa
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r-knitr
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r-limma
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r-readxl
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r-rmarkdown
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r-s4vectors
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r-summarizedexperiment
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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