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56 lines
1.1 KiB
Bash
56 lines
1.1 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=diffloop
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_pkgver=1.22.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Identifying differential DNA loops from chromatin topology data'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('MIT')
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depends=(
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r
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r-biobase
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r-biomart
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r-data.table
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r-dplyr
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r-edger
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r-foreach
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r-genomeinfodb
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r-genomicranges
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r-ggplot2
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r-iranges
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r-limma
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r-locfit
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r-matrixstats
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r-pbapply
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r-plyr
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r-readr
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r-reshape2
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r-rtracklayer
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r-s4vectors
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r-statmod
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r-sushi
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)
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optdepends=(
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r-deseq2
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r-diffloopdata
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r-ggrepel
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r-knitr
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r-rmarkdown
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
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}
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# vim:set ts=2 sw=2 et:
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