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58 lines
1.2 KiB
Bash
58 lines
1.2 KiB
Bash
# system requirements: GNU make
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=epigraHMM
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_pkgver=1.2.1
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Epigenomic R-based analysis with hidden Markov models'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('MIT')
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depends=(
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r
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r-bamsignals
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r-csaw
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r-data.table
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r-genomeinfodb
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r-genomicranges
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r-ggplot2
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r-ggpubr
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r-greylistchip
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r-iranges
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r-limma
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r-magrittr
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r-pheatmap
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r-rcpp
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r-rcpparmadillo
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r-rhdf5
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r-rhdf5lib
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r-rsamtools
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r-rtracklayer
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r-s4vectors
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r-scales
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r-summarizedexperiment
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)
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optdepends=(
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r-biocstyle
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r-bsgenome.rnorvegicus.ucsc.rn4
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r-chromstardata
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r-gcapc
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r-knitr
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r-rmarkdown
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
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}
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# vim:set ts=2 sw=2 et:
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