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https://github.com/BioArchLinux/Packages.git
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62 lines
1.2 KiB
Bash
62 lines
1.2 KiB
Bash
# system requirements: JAGS 4.x.y
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=infercnv
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_pkgver=1.10.1
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Infer Copy Number Variation from Single-Cell RNA-Seq Data'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('BSD')
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depends=(
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r
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r-ape
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r-argparse
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r-biocgenerics
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r-catools
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r-coda
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r-coin
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r-digest
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r-doparallel
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r-dplyr
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r-edger
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r-fastcluster
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r-fitdistrplus
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r-foreach
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r-futile.logger
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r-future
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r-ggplot2
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r-gplots
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r-gridextra
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r-hiddenmarkov
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r-leiden
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r-phyclust
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r-rann
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r-rcolorbrewer
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r-reshape
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r-rjags
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r-singlecellexperiment
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r-summarizedexperiment
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r-tidyr
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)
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optdepends=(
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r-biocstyle
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r-knitr
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r-rmarkdown
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
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}
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# vim:set ts=2 sw=2 et:
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