mirror of
https://github.com/BioArchLinux/Packages.git
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44 lines
937 B
Bash
44 lines
937 B
Bash
# system requirements: Cytoscape (>= 3.3.0), Java (>= 8)
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=KEGGlincs
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_pkgver=1.20.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Visualize all edges within a KEGG pathway and overlay LINCS data'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-annotationdbi
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r-gtools
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r-hgu133a.db
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r-httr
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r-igraph
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r-kegggraph
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r-keggrest
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r-kodata
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r-org.hs.eg.db
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r-plyr
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r-rjsonio
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r-xml
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)
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optdepends=(
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r-biocmanager
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r-graph
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r-knitr
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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