mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
53 lines
1.2 KiB
Bash
53 lines
1.2 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
|
|
|
_pkgname=methrix
|
|
_pkgver=1.8.0
|
|
pkgname=r-${_pkgname,,}
|
|
pkgver=${_pkgver//[:-]/.}
|
|
pkgrel=1
|
|
pkgdesc='Fast and efficient summarization of generic bedGraph files from Bisufite sequencing'
|
|
arch=('any')
|
|
url="https://bioconductor.org/packages/${_pkgname}"
|
|
license=('MIT')
|
|
depends=(
|
|
r
|
|
r-bsgenome
|
|
r-data.table
|
|
r-delayedarray
|
|
r-delayedmatrixstats
|
|
r-genomicranges
|
|
r-ggplot2
|
|
r-hdf5array
|
|
r-iranges
|
|
r-matrixstats
|
|
r-rtracklayer
|
|
r-summarizedexperiment
|
|
)
|
|
optdepends=(
|
|
r-biostrings
|
|
r-bsgenome.mmusculus.ucsc.mm9
|
|
r-bsseq
|
|
r-dss
|
|
r-genomeinfodb
|
|
r-genomicscores
|
|
r-knitr
|
|
r-mafdb.1kgenomes.phase3.grch38
|
|
r-mafdb.1kgenomes.phase3.hs37d5
|
|
r-plotly
|
|
r-rcolorbrewer
|
|
r-rmarkdown
|
|
r-testthat
|
|
)
|
|
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
|
sha256sums=('a')
|
|
|
|
build() {
|
|
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
|
}
|
|
|
|
package() {
|
|
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
|
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
|
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
|
|
}
|
|
# vim:set ts=2 sw=2 et:
|