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66 lines
1.2 KiB
Bash
66 lines
1.2 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=miloR
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_pkgver=1.2.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Differential neighbourhood abundance testing on a graph'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-biocneighbors
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r-biocparallel
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r-biocsingular
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r-cowplot
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r-dplyr
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r-edger
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r-ggbeeswarm
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r-ggplot2
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r-ggraph
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r-ggrepel
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r-gtools
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r-igraph
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r-irlba
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r-limma
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r-matrixstats
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r-patchwork
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r-rcolorbrewer
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r-s4vectors
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r-singlecellexperiment
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r-stringr
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r-summarizedexperiment
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r-tibble
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r-tidyr
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)
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optdepends=(
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r-biocstyle
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r-covr
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r-curl
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r-graphics
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r-knitr
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r-magick
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r-mass
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r-mousegastrulationdata
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r-mvtnorm
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r-rcurl
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r-rmarkdown
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r-scater
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r-scran
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r-testthat
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r-uwot
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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