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65 lines
1.3 KiB
Bash
65 lines
1.3 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=minfi
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_pkgver=1.40.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Analyze Illumina Infinium DNA methylation arrays'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('Artistic2.0')
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depends=(
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r
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r-beanplot
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r-biobase
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r-biocgenerics
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r-biocparallel
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r-biostrings
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r-bumphunter
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r-data.table
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r-delayedarray
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r-delayedmatrixstats
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r-genefilter
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r-genomeinfodb
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r-genomicranges
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r-geoquery
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r-hdf5array
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r-illuminaio
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r-iranges
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r-limma
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r-mclust
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r-nor1mix
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r-preprocesscore
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r-quadprog
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r-rcolorbrewer
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r-reshape
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r-s4vectors
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r-siggenes
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r-summarizedexperiment
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)
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optdepends=(
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r-biocstyle
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r-digest
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r-flowsorted.blood.450k
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r-illuminahumanmethylation450kanno.ilmn12.hg19
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r-illuminahumanmethylation450kmanifest
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r-knitr
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r-minfidata
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r-minfidataepic
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r-rmarkdown
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r-runit
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r-tools
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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