mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
56 lines
1.2 KiB
Bash
56 lines
1.2 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
|
|
|
_pkgname=missMethyl
|
|
_pkgver=1.28.0
|
|
pkgname=r-${_pkgname,,}
|
|
pkgver=${_pkgver//[:-]/.}
|
|
pkgrel=1
|
|
pkgdesc='Analysing Illumina HumanMethylation BeadChip Data'
|
|
arch=('any')
|
|
url="https://bioconductor.org/packages/${_pkgname}"
|
|
license=('GPL')
|
|
depends=(
|
|
r
|
|
r-annotationdbi
|
|
r-biasedurn
|
|
r-biobase
|
|
r-biocgenerics
|
|
r-genomicranges
|
|
r-go.db
|
|
r-illuminahumanmethylation450kanno.ilmn12.hg19
|
|
r-illuminahumanmethylation450kmanifest
|
|
r-illuminahumanmethylationepicanno.ilm10b4.hg19
|
|
r-illuminahumanmethylationepicmanifest
|
|
r-iranges
|
|
r-limma
|
|
r-methylumi
|
|
r-minfi
|
|
r-org.hs.eg.db
|
|
r-ruv
|
|
r-s4vectors
|
|
r-statmod
|
|
r-stringr
|
|
r-summarizedexperiment
|
|
)
|
|
optdepends=(
|
|
r-biocstyle
|
|
r-dmrcate
|
|
r-edger
|
|
r-experimenthub
|
|
r-knitr
|
|
r-minfidata
|
|
r-rmarkdown
|
|
r-tweedeseqcountdata
|
|
)
|
|
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
|
sha256sums=('a')
|
|
|
|
build() {
|
|
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
|
}
|
|
|
|
package() {
|
|
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
|
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
|
}
|
|
# vim:set ts=2 sw=2 et:
|