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67 lines
1.2 KiB
Bash
67 lines
1.2 KiB
Bash
# system requirements: C++11
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=NanoMethViz
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_pkgver=2.0.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Visualise methlation data from Oxford Nanopore sequencing'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('Apache')
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depends=(
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r
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r-annotationdbi
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r-assertthat
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r-biocsingular
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r-bsseq
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r-cpp11
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r-data.table
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r-dplyr
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r-e1071
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r-forcats
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r-fs
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r-genomicranges
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r-ggplot2
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r-ggthemes
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r-glue
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r-limma
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r-patchwork
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r-purrr
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r-rcpp
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r-readr
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r-rlang
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r-rsamtools
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r-rsqlite
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r-s4vectors
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r-scales
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r-scico
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r-stringr
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r-summarizedexperiment
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r-tibble
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r-tidyr
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r-withr
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r-zlibbioc
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)
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optdepends=(
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r-covr
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r-dss
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r-homo.sapiens
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r-knitr
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r-mus.musculus
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r-rmarkdown
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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