mirror of
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53 lines
1.1 KiB
Bash
53 lines
1.1 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=phenoTest
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_pkgver=1.42.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-annotate
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r-annotationdbi
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r-biobase
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r-biomart
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r-bma
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r-category
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r-ellipse
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r-genefilter
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r-ggplot2
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r-gplots
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r-gseabase
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r-heatplus
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r-hgu133a.db
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r-hmisc
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r-hopach
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r-limma
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r-xtable
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)
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optdepends=(
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r-go.db
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r-gseabase
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r-org.ce.eg.db
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r-org.dm.eg.db
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r-org.hs.eg.db
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r-org.mm.eg.db
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r-org.rn.eg.db
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r-parallel
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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