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73 lines
1.3 KiB
Bash
73 lines
1.3 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=RLSeq
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_pkgver=1.0.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='RLSeq: An analysis package for R-loop mapping data'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('MIT')
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depends=(
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r
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r-annotationhub
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r-aws.s3
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r-callr
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r-caretensemble
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r-circlize
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r-complexheatmap
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r-dplyr
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r-genomeinfodb
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r-genomicfeatures
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r-genomicranges
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r-ggplot2
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r-ggplotify
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r-ggprism
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r-pheatmap
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r-rcolorbrewer
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r-regioner
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r-rlhub
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r-rtracklayer
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r-valr
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r-venndiagram
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)
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optdepends=(
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r-annotationdbi
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r-biocstyle
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r-covr
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r-dt
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r-futile.logger
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r-httr
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r-jsonlite
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r-kableextra
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r-kernlab
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r-knitr
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r-lintr
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r-magick
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r-mass
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r-org.hs.eg.db
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r-r.utils
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r-randomforest
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r-rcmdcheck
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r-readr
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r-rmarkdown
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r-rpart
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r-testthat
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r-tibble
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r-tidyr
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r-txdb.hsapiens.ucsc.hg19.knowngene
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
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}
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# vim:set ts=2 sw=2 et:
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