mirror of
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85 lines
1.4 KiB
Bash
85 lines
1.4 KiB
Bash
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=RnBeads
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_pkgver=2.12.2
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='RnBeads'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-biocgenerics
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r-ff
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r-fields
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r-genomicranges
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r-ggplot2
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r-gplots
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r-gridextra
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r-illuminaio
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r-iranges
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r-limma
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r-matrixstats
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r-methylumi
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r-plyr
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r-s4vectors
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)
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optdepends=(
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r-annotate
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r-argparse
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r-biomart
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r-category
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r-doparallel
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r-foreach
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r-ggbio
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r-glad
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r-glmnet
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r-gostats
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r-gviz
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r-hexbin
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r-illuminahumanmethylation450kanno.ilmn12.hg19
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r-illuminahumanmethylation450kmanifest
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r-impute
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r-isva
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r-mclust
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r-methylseekr
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r-mgcv
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r-minfi
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r-missmethyl
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r-nlme
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r-org.hs.eg.db
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r-org.mm.eg.db
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r-org.rn.eg.db
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r-plotrix
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r-quadprog
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r-qvalue
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r-qvalue
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r-reffreeewas
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r-rnbeads.hg19
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r-rnbeads.mm9
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r-rpmm
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r-rtracklayer
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r-runit
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r-scales
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r-sesame
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r-shiny
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r-shinyjs
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r-sva
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r-watermelon
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r-wordcloud
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r-xml
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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