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49 lines
1.1 KiB
Bash
49 lines
1.1 KiB
Bash
# system requirements: GNU make
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=Rsamtools
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_pkgver=2.10.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('Artistic2.0')
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depends=(
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r
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r-biocgenerics
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r-biocparallel
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r-biostrings
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r-bitops
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r-genomeinfodb
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r-genomicranges
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r-iranges
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r-rhtslib
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r-s4vectors
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r-xvector
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r-zlibbioc
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)
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optdepends=(
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r-biocstyle
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r-bsgenome.hsapiens.ucsc.hg19
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r-genomicalignments
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r-genomicfeatures
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r-rnaseqdata.hnrnpc.bam.chr14
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r-runit
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r-shortread
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r-txdb.dmelanogaster.ucsc.dm3.ensgene
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r-txdb.hsapiens.ucsc.hg18.knowngene
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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