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62 lines
1.1 KiB
Bash
62 lines
1.1 KiB
Bash
# system requirements: C++11
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=scran
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_pkgver=1.22.1
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Methods for Single-Cell RNA-Seq Data Analysis'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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depends=(
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r
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r-beachmat
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r-bh
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r-biocgenerics
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r-biocparallel
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r-biocsingular
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r-bluster
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r-delayedarray
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r-delayedmatrixstats
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r-dqrng
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r-edger
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r-igraph
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r-limma
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r-metapod
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r-rcpp
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r-s4vectors
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r-scuttle
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r-singlecellexperiment
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r-statmod
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r-summarizedexperiment
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)
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optdepends=(
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r-biobase
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r-biocstyle
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r-deseq2
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r-dynamictreecut
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r-hdf5array
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r-knitr
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r-monocle
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r-pheatmap
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r-residualmatrix
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r-rmarkdown
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r-scaledmatrix
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r-scater
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r-scrnaseq
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r-testthat
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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